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colingauvin commented on Covid-19 mRNA Vaccination and 4-Year All-Cause Mortality   jamanetwork.com/journals/... · Posted by u/bpierre
colingauvin · 10 days ago
>Vaccinated individuals were older than unvaccinated individuals (mean [SD] age, 38.0 [11.8] years vs 37.1 [11.4] years), more frequently women (11 688 603 [51.3%] vs 2 876 039 [48.5%]) and had more cardiometabolic comorbidities (2 126 250 [9.3%] vs 464 596 [7.8%]).

This is interesting because of "supposed" cardiovascular effects of the vaccine that many folks were worried about. Even more confounding is the gender differences. You'd think skewing women would skew away from cardiovascular issues.

An alternate interpretation is that the at risk cardio unvaccinated died of COVID for some reason.

colingauvin commented on Montana becomes first state to enshrine 'right to compute' into law   montananewsroom.com/monta... · Posted by u/bilsbie
colingauvin · a month ago
>Government actions that restrict the ability to privately own or make use of computational resources for lawful purposes, which infringes on citizens' fundamental rights to property and free expression, must be limited to those demonstrably necessary and narrowly tailored to fulfill a compelling government interest in public health or safety.

....what does this say about DRM enforcement?

colingauvin commented on Mapping the off-target effects of every FDA-approved drug in existence   owlposting.com/p/mapping-... · Posted by u/abhishaike
pfisherman · 2 months ago
This article kind of grinds my gears. I feel like there is an unstated assumption that people in pharma R&D are idiots and haven’t thought of this stuff.

Pharma companies care very much about off target effects. Molecules get screened against tox targets, and a bad tox readout can be a death sentence for an entire program. And you need to look at the toxicity of major metabolites too.

One of the major value propositions of non small molecule modalities like biologics is specificity, and alternative metabolism pathways; no need to worry about the CYPs.

Another thing they fail to account for is volume of distribution. Does it matter if it hits some receptor only expressed in microglia if it can’t cross the blood brain barrier?

Also the reason why off targets for a lot of FDA approved drugs are unknown is because they were approved in the steampunk industrial era.

To me this whole article reads like an advertisement for a screening assay.

colingauvin · 2 months ago
I work in drug discovery (like for real, I have a DC under my belt, not hypothetical AI protein generation blah blah) and had the opposite experience reading it. We understand so little about most drugs. Dialing out selectivity for a closely related protein was one of the most fun and eye opening experiences of my career.

Of course we've thought of all these things. But it's typically fragmented, and oftentimes out of scope. One of the hardest parts of any R&D project is honestly just doing a literature search to the point of exhaustion.

colingauvin commented on Making the Electron Microscope   asimov.press/p/electron-m... · Posted by u/mailyk
Dracophoenix · 2 months ago
Are there any new developments on the technical side of microscopy such as new materials or techniques? What journals or trade papers are reliable in researching this information?

How does one become a microscopist as a profession? It seems like a specialized field with a narrow entry point and a lot of hoops.

colingauvin · 2 months ago
On the technical side, yes. The biggest new developments I can quickly think of are:

1) Cold field emission guns. The big challenge of an electron source is producing a coherent beam - that is a beam that comes off the tip one electron at a time, at the same location, the same angle, and with the same energy. The cooler the tip runs, the more coherent it tends to be. This has made a big difference and is just now widely commercially available.

2) Narrow pole-piece gap. The sample on most TEMs sits sandwiched between two objective lenses that operate in tandem - these are typically called twin objectives. The upper one ensures the beam is parallel, which primarily results in uniform defocus (or focus if one so desires) across the image. The lower one is responsible for image formation and initial magnification (actually, all of your resolution essentially). The gap between them is responsible for your primary aberrations: spherical and chromatic. Reducing this gap reduces the total aberrations in the image.

I will side bar that the physics of a microscope are not really holding it back from what I'm doing - generating structures of biomolecules. Really, I'm more limited by the camera technology than anything, because the cameras simply aren't performant enough to dose the images to the level I'd like, to collect as many images as possible in as short a time as possible. Fundamentally, I tend to be limited by number of observations.

For the really cutting edge stuff...check out ptychography:

https://en.wikipedia.org/wiki/Ptychography

>How does one become a microscopist as a profession? It seems like a specialized field with a narrow entry point and a lot of hoops.

There are basically two routes for TEM - material science, or biochemistry. The way to become a microscopist for me was to show up at a University that had a grant for a microscope, but no one to operate it. :)

In general, universities operate TEM cores, frequently called bioimaging or something. (Structural biology if it's newer although that's just one application among many). Frequently there are positions for all education levels - bachelor's through PhD, depending on what one wants to do. Training is a mix of hands on (interfacing with complicated systems) and theoretical (physics and image formation). Typically the operators aren't the most theoretical, but have a lot of very niche practical knowledge you only get from being around broken microscopes.

colingauvin commented on Making the Electron Microscope   asimov.press/p/electron-m... · Posted by u/mailyk
colingauvin · 2 months ago
I am a cryo-electron microscopist (TEM), will keep an eye on this thread in case there's any specific questions.

(Also have done Xray crystallography)

colingauvin commented on How America got hooked on ultraprocessed foods   nytimes.com/interactive/2... · Posted by u/mykowebhn
jay_kyburz · 2 months ago
You don't need to start with GLP1s. You can start with smaller portions. Folks need to learn how to eat, not another drug.
colingauvin · 2 months ago
All available evidence suggests this does not work at population scale.
colingauvin commented on How America got hooked on ultraprocessed foods   nytimes.com/interactive/2... · Posted by u/mykowebhn
kulahan · 2 months ago
I couldn't possibly disagree with your last point harder. What's with people and blindly trusting that the pharma companies found a holy grail medicine and didn't rush it to market well before the necessary research is in?

Even more than that, dosing hundreds of millions of Americans for life is one insanely expensive and ridiculous solution.

Side note, is there good research on the effects of microplastics on the body? I'm holding out adding that to my plate of concerns until this is the case, and last I heard we were pretty in-the-dark on the topic.

colingauvin · 2 months ago
If you're worried about the possible, unknown side effects of GLP1s, check out the inevitable, well-known side effects of being morbidly overweight.
colingauvin commented on Why Marriage Is Increasingly for the Affluent   wsj.com/lifestyle/relatio... · Posted by u/sandwichsphinx
technofiend · 3 months ago
My wife was a wedding coordinator for many years and we were both aghast at how anything dubbed "wedding" was magically 10x normal cost. I used to joke that wedding water would be next. Then some crafty bastard ran with the idea and started selling bottled water labeled for the events! I can't complain my joke turned into someone's side hustle but on the other hand we eloped and I don't regret it.
colingauvin · 3 months ago
I went to a friend's outdoor wedding in July where water was $2.50/bottle.
colingauvin commented on Denmark close to wiping out cancer-causing HPV strains after vaccine roll-out   gavi.org/vaccineswork/den... · Posted by u/slu
sillyfluke · 3 months ago
Why is there an age limit on an all encompassing vax, wasn't the famous posterchild for this disease Michael Douglas?
colingauvin · 3 months ago
A lot of replies that are mostly true, or somewhat true, or simply missing the real reasons.

There are two factors here:

1) Vaccine-derived immunity is a function of the individual's immune response, which in general, weakens significantly with age. It is not unrealistic for a vaccine to simply fail to elicit any response in someone old enough.

2) It is very, very difficult to recruit folks without HPV that are over 40 for a clinical trial. Most people of that age, who were never immunized, most likely have had it. This significantly convolutes the signal.

3) This is all especially confounded once something becomes "standard of care". Every year there are fewer and fewer people age 40+ with HPV.

For these reasons, the vaccine is currently officially ??? in people over 40. Most doctors will prescribe it anyways if you ask. It may or may not infer immunity. It almost certainly will not harm you.

u/colingauvin

KarmaCake day312January 26, 2025
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