Readit News logoReadit News
rauhallinen commented on Don Knuth letter about libraries increasingly unable to afford prices (2003) [pdf]   cs.stanford.edu/~knuth/jo... · Posted by u/kbradero
rauhallinen · a year ago
Some rants from the foxhole.

American Chemical Society is the one of the main publishers in molecular sciences. Researchers at Finnish universities haven't been able to access articles published after 2023 after failed negotiations [0], greatly hindering one's - and collectively the nation's - ability to progress in these fields. It's quite frustrating, shocking, and eye-opening to have this rug pulled beneath you.

Finland is not a poor country, and the situation is surely worse elsewhere. Nonetheless, our economy and the academic funding situation is quite crappy and getting crappier. In 2022, Finnish university library consortium spent ~25M€ for subscriptions [3]. Last year, the negotiated sum for seven main publishers was ~16M€, inc the failed ACS deal. One can easily imagine better ways to use the dozens of millions.

Science is expensive and inequalities between countries/uni's/wherever are a n unfortunate fact of the world. Not every player can pay millions to get the 10M€ Cryo-EM machine, and thus can't compete in advancing knowledge frontier in this.

To some extent, constraints cultivate creativity. One can still participate through collaboration, theoretical and computational work, creative crafting of experiments with already existing equipment (& with fascinating DIY low-cost open-science hardwarex stuff!)

However, one must know the giants on whose shoulders one stands on, and the game played by the behemoth publishers attacks this fundament. The consequence - inequality in accessing knowledge is deeply disgusting in its artificiality.

Meanwhile, people at eg. MIT are able to get the whole ACS corpus in sweet delicious machine readable XML [3]. In the same time it takes for the "poor" researcher to get one email requested watermarked pdf with detached figures that they excitedly share to their group, a Boston grad student can curl terabytes and science-of-science/NLP/RAG the shit out of it.

Gap exists and grows with the arbitrarily increasing costs. Something needs to change, but for now, I'm cynical. Strong will get stronger and so on.

Thank god for open science movement living on github and *rxivs, and for the risky work taken on by shadow librarians.

[0] https://finelib.fi/sopimus-acsn-kanssa-paattynyt/

[1] https://www.kiwi.fi/display/finelib/Vuosikertomukset

[2] https://finelib.fi/kustannukset-saatava-kuriin-tiedelehtien-...

[3] https://libraries.mit.edu/scholarly/publishing/text-and-data...

rauhallinen commented on The link between August birthdays and ADHD (2018)   nytimes.com/2018/11/28/op... · Posted by u/dymk
bound008 · 3 years ago
I would highly recommend any readers on here who have ADHD to read "Scattered: How Attention Deficit Disorder Originates" by Dr. Gabor Maté[1]

It provides a compelling argument as to the root cause of ADHD.

[1] https://drgabormate.com/book/scattered-minds/

rauhallinen · 3 years ago
Agree with other responses. Maté's book, as his other works, resonates intuively - a humanistic shout in this cold and sick world.

Things are however more complex. He gets a lot of publicity, eg with recent Joe Rogan interview clips on the topic being spammed to me by YouTube's rec engines. Mental health issues are something that many people take intellectually lazy stances, to one direction or another, and this is somewhat worrying.

This book is 20 years old. I'd imagine the scientific & clinical understanding of ADHD has progressed since. Opposing views are of course important for progression, but I'd like to understand his thinking in wider context of psychiatry. Would be interesting to see a dissection of his ADHD points, carried out in a rigorous way.

rauhallinen commented on Seeing how odor is processed in the brain   u-tokyo.ac.jp/focus/en/pr... · Posted by u/NickRandom
shagie · 3 years ago
> I've always wondered how far off we are from being able to "3D print" tastes and smells. I had a machine learning professor tell me that chemoreception is the only sense that can't be decomposed into "eigensmells" or "eigentastes" - not sure if that still holds true today.

This gets into an interesting and controversial (in that scientists will argue about it) domain.

Smell may be detecting the quantum vibrations of electrons.

2011: Flies sniff out heavy hydrogen - https://www.nature.com/articles/news.2011.39

2013: 'Quantum smell' idea gains ground - https://www.bbc.com/news/science-environment-21150046

2019: Human smell perception is governed by quantum spin-residual information - https://aip.scitation.org/doi/10.1063/1.5121155

https://en.wikipedia.org/wiki/Vibration_theory_of_olfaction

And for the other take on it:

2015: What’s that smell? A controversial theory of olfaction deemed implausible - https://theconversation.com/whats-that-smell-a-controversial...

Tangentially to the fly test: 2021: Heavy water tastes sweeter - https://www.pnas.org/post/journal-club/heavy-water-tastes-sw...

> And in a taste test with noses plugged, over half did, suggesting that taste receptors on the tongue were indeed picking up the subtle flavor.

rauhallinen · 3 years ago
There's some work on using ML methods to map from the structure of a molecule to an odor. Interesting to see where it goes, current results aren't that mind blowing:

1. B. Sanchez-Lengeling, J. N. Wei, B. K. Lee, R. C. Gerkin, A. Aspuru-Guzik, A. B. Wiltschko, Machine Learning for Scent: Learning Generalizable Perceptual Representations of Small Molecules. arXiv [stat.ML] (2019), (available at http://arxiv.org/abs/1910.10685).

2. J. Kowalewski, B. Huynh, A. Ray, A System-Wide Understanding of the Human Olfactory Percept Chemical Space. Chem. Senses. 46 (2021), doi:10.1093/chemse/bjab007.

3. L. Shang, C. Liu, F. Tang, B. Chen, L. Liu, K. Hayashi, Odorant molecular feature mining by diverse deep neural networks for prediction of odor perception categories. bioRxiv (2022), , doi:10.1101/2022.04.20.488977.

rauhallinen commented on Launch HN: Phase Biolabs (YC W22) – Converting CO2 to Carbon-Neutral Chemicals    · Posted by u/DavidPBL
rauhallinen · 4 years ago
Fascinating indeed - good luck!

Saw some talks years ago by Daniel Nocera, in which they did water splitting and fed hydrogen to engineered bacteria to make more complex products. Cool stuff - I'd imagine the end products, fuels in their case, would still be way too expensive.

There's interesting stuff going on in modifying microbes to make cannabinoids and other natural products. Would be kinda cool to combine these two :)

rauhallinen commented on New alternatives to HSL and HSV that better match color perception   bottosson.github.io/posts... · Posted by u/bjornornorn
rauhallinen · 4 years ago
I had a project where I had to convert absorption spectrum of a liquid sample into a colour. It was one of those "Just do this quick, it doesn't have to be perfect" type of things where I didn't get a chance to really understand it. I was baffled how many standards and technicalities there is behind a seemingly simple thing.
rauhallinen commented on Why are so many knowledge workers quitting?   newyorker.com/culture/off... · Posted by u/irtefa
MattGaiser · 4 years ago
How does a 40% contract work for the company? Is what you are doing just rather small/not urgent (I mean this respectfully) for the company? I have asked a couple managers why companies do not offer this option and their answer is usually deadline/project size.
rauhallinen · 4 years ago
My work is important but not urgently so. I gave them the ultimatum - I have a lot of knowledge hard to gain from other sources.
rauhallinen commented on Why are so many knowledge workers quitting?   newyorker.com/culture/off... · Posted by u/irtefa
rauhallinen · 4 years ago
I'm one of these people. Changed to a 40% contract, work Mon-Tue. I am in a privileged position where I'm able to live with my wage comfortably, albeit frugally. Living in Nordics helps too.

I was expecting that I'd be dwelling deep with all of those side projects that I was craving to do on work days instead of solving semi to not-at-all exciting problems for a company. Found out that those were mostly escapistic fantasies to regain my creative mind under the time and stress pressures.

Now I enjoy living simply. I feel better mentally and physically. Interesting to see where this will go. Maybe I'll eat the hustle fruit some day and start grinding - this idea that dictated my adult life seems very alien for me now.

rauhallinen commented on How The Chronicle is trying to malign Sci-Hub   engineuring.wordpress.com... · Posted by u/boramalper
rauhallinen · 4 years ago
So no new articles have been uploaded this year.

While I have relatively good access options through my university, roughly half of the publications appearing in my Google Scholar alerts are unaccessible. As they are also in fields were use of preprint services isn't common, it really interferes with me being up to date with ongoing research.

As the use of sci-hub is so common, I wonder about the wider implications of the newest articles being inaccessible. Could bibliometric methods be used to quantify this? Missed citations? Less citations for articles published in more obscure journals?

Interesting that no new solutions have come out yet. I'm seeing people getting back to use #ICanHazPDF - not the best way to conduct research when an article is often just a gateway to more finding more relevant articles to read.

rauhallinen commented on Mind reading technology: helmet aims to unlock brain's secrets   bloomberg.com/news/featur... · Posted by u/carride
rauhallinen · 4 years ago
This came out recently, "A low-cost, wearable, do-it-yourself functional near-infrared spectroscopy (DIY-fNIRS) headband"

https://www.sciencedirect.com/science/article/pii/S246806722...

Looking forward for that mysterious free time to build this & play around with neuro-feedback

rauhallinen commented on Universities have formed a company that looks a lot like a patent troll   eff.org/deeplinks/2021/06... · Posted by u/polm23
rauhallinen · 4 years ago
During my time as a research assistant / grad student there was a remarkable shift in the atmosphere. It started with massive layoffs of research staff, linked to the more general savings of our government.

More esoteric professors were replaced with more efficient manuscript machines submitting manuscripts to more prestigious journals. Soon after the layoffs, the university's innovation and commercialization services became extremely active. Recurring events at lecture rooms where we were blasted on how our work is IP of the university, how the university takes only 50% cut if something works, how cool is it to be a researcher who commercializes ideas in comparison to being one those dusty farts in the science cave studying one protein or butterfly for their entire life.

Being a believer and practitioner of open source, I once asked how does this all this apply to computational science. Basically all algorithms and tools should be passed through them to see if they have commercial potential - if no, we can go ahead. Found it appalling and interfering with my intellectual freedom, one of the many events that made me pursue life outside the academia.

u/rauhallinen

KarmaCake day233April 8, 2021View Original