I suspect the answer is that having flagella without a nose is still better than having no flagella. If so it suggests evolution isn't good at accessing groups of mutations that aren't individually beneficial.
A better title, knowing what we now, might be "To outperform GPT4, do more than imitating"
I think a lot of people believe exactly that. To take one example from the "We Have No Moat" essay:
"It doesn’t take long before the cumulative effect of all of these fine-tunings overcomes starting off at a size disadvantage. Indeed, in terms of engineer-hours, the pace of improvement from these models vastly outstrips what we can do with our largest variants, and the best are already largely indistinguishable from ChatGPT." - https://www.semianalysis.com/p/google-we-have-no-moat-and-ne...
It produces shitty flagellum, better flagellum, good flagellum.
But the problem is we don't see the intermediate forms. So right now you might see a complicated flagellum that has a lot of highly specialized parts that all need eachother, but that is merely a refinement that took place after all the pieces were already there. Like once an arch is complete, all the scaffolding that was holding it up is now vestigial and if it is removed the arch will remain standing.