I also believe that it has drawn too much from MATLAB only for the sake of being familiar to that group and not the computer science and software engineering communities though such as the one based indexing you mentioned. Unfortunately that ship has already sailed and we will likely have to wait another 10 years for the next one to hopefully fix those problems.
I don't think Julia or R are going to steal this away. In fact, I think Julia is a major turn off to engineers with some of the bizarre choices they made (eg. 1-based indexing to appease math-centric backgrounds). If you don't excite engineers, you're not going to get as many library and optimization contributions.
Julia feels like it came too late in the game and the newer entrants are making quick strides in the mathematics space.
I could be totally wrong. This is just my take, and I have no stake in this fight other than I want a good, safe, highly-compatible, and fast ecosystem to work with.